Installation Guide

To run the PAL 2.0 code on your system, follow the given steps:

  1. Clone the PAL 2.0 GitHub repository locally on your system. To do so, click the <> Code ▼ button and you can find various methods to clone the repository on your system.

  2. Download and install Anaconda on your system, if it is not already installed.

  3. Open Anaconda Prompt and navigate to the directory where you’ve cloned the repository in Step 1.

  4. Run the following command:

    conda env create -f PAL_env.yml

This will create a virtual environment called PAL_env that contains all the required dependencies to run PAL 2.0 on your system, including Snakemake.

  1. Activate the above environment by running the following command:

    conda activate PAL_env